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The calibration procedure is based on this paper by Ozgur: O. Sahin, "Harnessing Bifurcations in Tapping-Mode Atomic Force Microscopy to Calibrate Time-Varying Tip-Sample Force Measurements", Rev. Sci. Inst. 78 (2007) 103707. In addition there are a few tweaks to adjust for scaling factors...
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The offset tip used in HarmoniX should enhance the signal-to-noise ratio of the cantilever during tapping mode; since you went back to a more traditional probe do you create more noise in your measurements?
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How does PeakForce QNM mode comparing to Tapping mode Phase Imaging and Harmonix mode
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At a technical level, what is the difference between Harmonyx and PeakForce QNM?