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The calibration procedure is based on this paper by Ozgur: O. Sahin, "Harnessing Bifurcations in Tapping-Mode Atomic Force Microscopy to Calibrate Time-Varying Tip-Sample Force Measurements", Rev. Sci. Inst. 78 (2007) 103707. In addition there are a few tweaks to adjust for scaling factors...
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What is difference between Peak Force QNM and Harmonix mode in terms of the information you are getting?
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What is the speed gain of peakForce vs HarmoniX?
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How quantitative are modulus measurements?
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The offset tip used in HarmoniX should enhance the signal-to-noise ratio of the cantilever during tapping mode; since you went back to a more traditional probe do you create more noise in your measurements?
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HarmoniX registers peak force as well, can the HarmoniX software use peak force as the feedback paramater
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What can HarmoniX do but PeakForce QNM can not?